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This page was generated on 2023-06-06 11:00:37 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for OpenStats on kunpeng2


To the developers/maintainers of the OpenStats package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OpenStats.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1415/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OpenStats 1.13.0  (landing page)
Hamed Haseli Mashhadi
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/OpenStats
git_branch: devel
git_last_commit: cbaa154
git_last_commit_date: 2023-04-25 15:17:33 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

Summary

Package: OpenStats
Version: 1.13.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings OpenStats_1.13.0.tar.gz
StartedAt: 2023-06-06 03:32:46 -0000 (Tue, 06 Jun 2023)
EndedAt: 2023-06-06 03:35:07 -0000 (Tue, 06 Jun 2023)
EllapsedTime: 141.2 seconds
RetCode: 0
Status:   OK  
CheckDir: OpenStats.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings OpenStats_1.13.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/OpenStats.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘OpenStats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OpenStats’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OpenStats’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) OpenStatsAnalysis.Rd:108: Escaped LaTeX specials: \& \& \& \& \&
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘OpenStats.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/OpenStats.Rcheck/00check.log’
for details.



Installation output

OpenStats.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL OpenStats
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘OpenStats’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OpenStats)

Tests output


Example timings

OpenStats.Rcheck/OpenStats-Ex.timings

nameusersystemelapsed
OpenStatsAnalysis2.4410.0512.500
OpenStatsBuilder000
OpenStatsComplementarySplit1.7250.0211.749
OpenStatsList1.1700.0981.393
OpenStatsReport2.5620.0792.648
plot.OpenStats0.6100.0280.663
plot.OpenStatsComplementarySplit1.9220.0361.966
plot.OpenStatsFE0.0800.0120.092
plot.OpenStatsMM0.6770.0440.722
plot.OpenStatsRR0.3430.0040.348
print.OpenStats0.5810.0360.641
print.OpenStatsComplementarySplit1.8970.0601.961
print.OpenStatsFE0.0810.0080.090
print.OpenStatsMM1.0530.0321.086
print.OpenStatsRR0.3290.0280.357
summary.OpenStats0.5700.0440.638
summary.OpenStatsComplementarySplit1.8450.0241.873
summary.OpenStatsFE0.0860.0000.086
summary.OpenStatsMM0.6710.0200.692
summary.OpenStatsRR0.3430.0080.352