Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:37 -0000 (Tue, 06 Jun 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the OLIN package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OLIN.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 1390/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
OLIN 1.79.0 (landing page) Matthias Futschik
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | |||||||||
Package: OLIN |
Version: 1.79.0 |
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:OLIN.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings OLIN_1.79.0.tar.gz |
StartedAt: 2023-06-06 03:24:21 -0000 (Tue, 06 Jun 2023) |
EndedAt: 2023-06-06 03:26:44 -0000 (Tue, 06 Jun 2023) |
EllapsedTime: 142.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OLIN.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:OLIN.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings OLIN_1.79.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/OLIN.Rcheck’ * using R version 4.3.0 (2023-04-21) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (GCC) 10.3.1 GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * checking for file ‘OLIN/DESCRIPTION’ ... OK * this is package ‘OLIN’ version ‘1.79.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘OLIN’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘marray’ ‘methods’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘convert’ in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. Package in Depends field not imported from: ‘locfit’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ino: no visible global function definition for ‘locfit’ ino: no visible global function definition for ‘predict’ lin: no visible global function definition for ‘locfit’ lin: no visible global function definition for ‘predict’ oin: no visible global function definition for ‘gcvplot’ oin: no visible global function definition for ‘locfit’ oin: no visible global function definition for ‘predict’ olin: no visible global function definition for ‘gcv’ olin: no visible global function definition for ‘locfit’ olin: no visible global function definition for ‘predict’ Undefined global functions or variables: gcv gcvplot locfit predict Consider adding importFrom("stats", "predict") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed olin 22.651 0 23.763 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘OLIN.Rnw’... OK OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.18-bioc/meat/OLIN.Rcheck/00check.log’ for details.
OLIN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL OLIN ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘OLIN’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OLIN)
OLIN.Rcheck/OLIN-Ex.timings
name | user | system | elapsed | |
anovaint | 0.247 | 0.008 | 0.255 | |
anovapin | 0.083 | 0.000 | 0.083 | |
anovaplate | 0.075 | 0.008 | 0.083 | |
anovaspatial | 0.194 | 0.012 | 0.206 | |
backgroundCorrect2 | 0.573 | 0.019 | 0.597 | |
bas | 0.195 | 0.000 | 0.196 | |
colorbar.mxy | 0.048 | 0.000 | 0.048 | |
fdr.int | 0 | 0 | 0 | |
fdr.int2 | 0.001 | 0.000 | 0.000 | |
fdr.spatial | 0.000 | 0.000 | 0.001 | |
fdr.spatial2 | 0 | 0 | 0 | |
fgbg.visu | 0.103 | 0.000 | 0.104 | |
ino | 0.304 | 0.004 | 0.310 | |
lin | 0.786 | 0.008 | 1.002 | |
m2v | 0.054 | 0.004 | 0.059 | |
ma.matrix | 0.282 | 0.004 | 0.286 | |
ma.vector | 0.423 | 0.000 | 0.472 | |
mxy.abs.plot | 0.210 | 0.008 | 0.418 | |
mxy.plot | 0.066 | 0.004 | 0.073 | |
mxy2.plot | 0.051 | 0.004 | 0.056 | |
oin | 1.051 | 0.004 | 1.262 | |
olin | 22.651 | 0.000 | 23.763 | |
p.int | 0.000 | 0.000 | 0.001 | |
p.int2 | 0 | 0 | 0 | |
p.spatial | 0 | 0 | 0 | |
p.spatial2 | 0.001 | 0.000 | 0.000 | |
sig.mask | 0 | 0 | 0 | |
sigint.plot | 0 | 0 | 0 | |
sigint.plot2 | 0.001 | 0.000 | 0.000 | |
sigxy.plot | 0.000 | 0.000 | 0.001 | |
sigxy.plot2 | 0 | 0 | 0 | |
v2m | 0.046 | 0.008 | 0.055 | |