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This page was generated on 2023-06-06 11:00:37 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for MultiBaC on kunpeng2


To the developers/maintainers of the MultiBaC package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MultiBaC.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1310/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MultiBaC 1.11.0  (landing page)
The package maintainer
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/MultiBaC
git_branch: devel
git_last_commit: af09f35
git_last_commit_date: 2023-04-25 15:20:34 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

Summary

Package: MultiBaC
Version: 1.11.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:MultiBaC.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings MultiBaC_1.11.0.tar.gz
StartedAt: 2023-06-06 02:49:18 -0000 (Tue, 06 Jun 2023)
EndedAt: 2023-06-06 02:53:01 -0000 (Tue, 06 Jun 2023)
EllapsedTime: 223.4 seconds
RetCode: 0
Status:   OK  
CheckDir: MultiBaC.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:MultiBaC.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings MultiBaC_1.11.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/MultiBaC.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘MultiBaC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MultiBaC’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MultiBaC’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
MultiBaC          14.179  0.399  14.605
ARSyNbac          13.155  0.791  13.974
explained_varPlot 13.817  0.056  13.900
plot              13.726  0.040  13.794
inner_relPlot     13.663  0.004  13.691
Q2_plot           13.485  0.140  13.648
plot_pca          13.594  0.000  13.620
batchCorrection   13.426  0.100  13.550
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘MultiBaC.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

MultiBaC.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL MultiBaC
###
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* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘MultiBaC’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MultiBaC)

Tests output


Example timings

MultiBaC.Rcheck/MultiBaC-Ex.timings

nameusersystemelapsed
ARSyNbac13.155 0.79113.974
MultiBaC14.179 0.39914.605
Q2_plot13.485 0.14013.648
batchCorrection13.426 0.10013.550
batchEstPlot1.0630.0041.070
createMbac0.4600.0000.461
explained_varPlot13.817 0.05613.900
genMissingOmics1.2280.0311.262
genModelList0.5980.0000.600
inner_relPlot13.663 0.00413.691
multiyeast0.0030.0000.002
plot13.726 0.04013.794
plot_pca13.594 0.00013.620
summary0.4600.0000.462