Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:37 -0000 (Tue, 06 Jun 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the Mulcom package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Mulcom.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 1308/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Mulcom 1.51.0 (landing page) Claudio Isella
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | |||||||||
Package: Mulcom |
Version: 1.51.0 |
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:Mulcom.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings Mulcom_1.51.0.tar.gz |
StartedAt: 2023-06-06 02:48:04 -0000 (Tue, 06 Jun 2023) |
EndedAt: 2023-06-06 02:49:27 -0000 (Tue, 06 Jun 2023) |
EllapsedTime: 83.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: Mulcom.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:Mulcom.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings Mulcom_1.51.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/Mulcom.Rcheck’ * using R version 4.3.0 (2023-04-21) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (GCC) 10.3.1 GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * checking for file ‘Mulcom/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Mulcom’ version ‘1.51.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Mulcom’ can be installed ... OK * used C++ compiler: ‘g++ (GCC) 10.3.1’ * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': ‘Mulcom.Rmd’ Package has no Sweave vignette sources and no VignetteBuilder field. * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed mulInt 9.193 0.176 9.387 mulOpt 7.234 0.008 7.256 * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.18-bioc/meat/Mulcom.Rcheck/00check.log’ for details.
Mulcom.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL Mulcom ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘Mulcom’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 10.3.1’ g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c mulLibs.cc -o mulLibs.o g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o Mulcom.so mulLibs.o -L/home/biocbuild/R/R-4.3.0/lib -lR installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-Mulcom/00new/Mulcom/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Mulcom)
Mulcom.Rcheck/Mulcom-Ex.timings
name | user | system | elapsed | |
MULCOM-class | 0.253 | 0.004 | 0.258 | |
MULCOM_P | 0.223 | 0.000 | 0.223 | |
mulCAND | 0.814 | 0.020 | 0.835 | |
mulCalc | 0.218 | 0.004 | 0.223 | |
mulDELTA | 0.181 | 0.004 | 0.186 | |
mulDiff | 0.836 | 0.020 | 0.857 | |
mulFSG | 0.708 | 0.000 | 0.709 | |
mulIndex | 0.166 | 0.004 | 0.171 | |
mulInt | 9.193 | 0.176 | 9.387 | |
mulOpt | 7.234 | 0.008 | 7.256 | |
mulOptPars | 0.645 | 0.004 | 0.650 | |
mulOptPlot | 1.674 | 0.012 | 1.689 | |
mulParOpt | 1.772 | 0.000 | 1.775 | |
mulPerm | 0.644 | 0.024 | 0.669 | |
mulPermC | 0.166 | 0.000 | 0.167 | |
mulScores | 0.214 | 0.000 | 0.215 | |