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This page was generated on 2023-06-06 11:00:35 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
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CHECK results for MatrixGenerics on kunpeng2


To the developers/maintainers of the MatrixGenerics package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MatrixGenerics.git to reflect on this report. See Troubleshooting Build Report for more information.

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raw results

Package 1116/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MatrixGenerics 1.13.0  (landing page)
Peter Hickey
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/MatrixGenerics
git_branch: devel
git_last_commit: 74eab7d
git_last_commit_date: 2023-04-25 15:16:54 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    ERROR  

Summary

Package: MatrixGenerics
Version: 1.13.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:MatrixGenerics.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings MatrixGenerics_1.13.0.tar.gz
StartedAt: 2023-06-06 01:19:18 -0000 (Tue, 06 Jun 2023)
EndedAt: 2023-06-06 01:19:49 -0000 (Tue, 06 Jun 2023)
EllapsedTime: 31.1 seconds
RetCode: 1
Status:   ERROR  
CheckDir: MatrixGenerics.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:MatrixGenerics.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings MatrixGenerics_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/MatrixGenerics.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘MatrixGenerics/DESCRIPTION’ ... OK
* this is package ‘MatrixGenerics’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MatrixGenerics’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘inst/NEWS.Rd’:
  EXPR must be a length 1 vector
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  ‘methods:::fromNextMethod’ ‘methods:::getGenericFromCall’
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.load_next_suggested_package_to_search’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  `matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
  Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
  ── Failure ('test-api_compatibility.R:1497:2'): rowWeightedMedians works  ──────
  `matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
  Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
  ── Failure ('test-api_compatibility.R:1518:2'): rowWeightedSds works  ──────────
  `matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
  Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
  ── Failure ('test-api_compatibility.R:1539:2'): rowWeightedVars works  ─────────
  `matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
  Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
  
  [ FAIL 70 | WARN 261 | SKIP 0 | PASS 242 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/MatrixGenerics.Rcheck/00check.log’
for details.


Installation output

MatrixGenerics.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL MatrixGenerics
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘MatrixGenerics’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘rowAlls’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colAlls’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowAnyNAs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colAnyNAs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowAnys’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colAnys’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowAvgsPerColSet’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colAvgsPerRowSet’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowCollapse’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colCollapse’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowCounts’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colCounts’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowCummaxs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colCummaxs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowCummins’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colCummins’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowCumprods’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colCumprods’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowCumsums’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colCumsums’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowDiffs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colDiffs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowIQRDiffs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colIQRDiffs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowIQRs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colIQRs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowLogSumExps’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colLogSumExps’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowMadDiffs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colMadDiffs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowMads’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colMads’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowMaxs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colMaxs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowMeans2’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colMeans2’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowMedians’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colMedians’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowMins’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colMins’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowOrderStats’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colOrderStats’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowProds’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colProds’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowQuantiles’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colQuantiles’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowRanges’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colRanges’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowRanks’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colRanks’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowSdDiffs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colSdDiffs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowSds’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colSds’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowSums2’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colSums2’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowTabulates’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colTabulates’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowVarDiffs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colVarDiffs’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowVars’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colVars’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowWeightedMads’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colWeightedMads’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowWeightedMeans’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colWeightedMeans’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowWeightedMedians’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colWeightedMedians’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowWeightedSds’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colWeightedSds’ in package ‘MatrixGenerics’
Creating a new generic function for ‘rowWeightedVars’ in package ‘MatrixGenerics’
Creating a new generic function for ‘colWeightedVars’ in package ‘MatrixGenerics’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MatrixGenerics)

Tests output

MatrixGenerics.Rcheck/tests/testthat.Rout.fail


R version 4.3.0 (2023-04-21) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(MatrixGenerics)
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

> 
> test_check("MatrixGenerics")
[ FAIL 70 | WARN 261 | SKIP 0 | PASS 242 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-api_compatibility.R:21:2'): colAlls works  ───────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:45:2'): colAnyNAs works  ─────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:65:2'): colAnys works  ───────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:114:2'): colCollapse works  ──────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:138:2'): colCounts works  ────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:162:2'): colCummaxs works  ───────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:182:2'): colCummins works  ───────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:202:2'): colCumprods works  ──────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:222:2'): colCumsums works  ───────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:242:2'): colDiffs works  ─────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:262:2'): colIQRDiffs works  ──────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:286:2'): colIQRs works  ──────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:306:2'): colLogSumExps works  ────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:326:2'): colMadDiffs works  ──────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:350:2'): colMads works  ──────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:370:2'): colMaxs works  ──────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:390:2'): colMeans2 works  ────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Names: 3 string mismatches
Length mismatch: comparison on first 7 components
Component 5: Modes: logical, call
Component 5: Lengths: 1, 2
Component 5: target is logical, current is call
Component 6: Modes of target, current: call, name
Component 6: target, current do not match when deparsed
Component 7: Modes of target, current: name, logical
Component 7: target, current do not match when deparsed
── Failure ('test-api_compatibility.R:410:2'): colMedians works  ───────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:430:2'): colMins works  ──────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:450:2'): colOrderStats works  ────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:475:2'): colProds works  ─────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:495:2'): colQuantiles works  ─────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Names: 3 string mismatches
Length mismatch: comparison on first 9 components
Component 7: Modes: numeric, name
Component 7: target is numeric, current is name
Component 8: Modes of target, current: name, logical
Component 8: target, current do not match when deparsed
── Failure ('test-api_compatibility.R:515:2'): colRanges works  ────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:535:2'): colRanks works  ─────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:559:2'): colSdDiffs works  ───────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:583:2'): colSds works  ───────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Names: 4 string mismatches
Length mismatch: comparison on first 8 components
Component 5: Modes: logical, NULL
Component 5: Lengths: 1, 0
Component 5: target is logical, current is NULL
Component 6: target is NULL, current is call
Component 7: Modes of target, current: call, name
Component 7: target, current do not match when deparsed
Component 8: Modes of target, current: name, logical
...
── Failure ('test-api_compatibility.R:603:2'): colSums2 works  ─────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:623:2'): colTabulates works  ─────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:644:2'): colVarDiffs works  ──────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:668:2'): colVars works  ──────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Names: 4 string mismatches
Length mismatch: comparison on first 8 components
Component 5: Modes: logical, NULL
Component 5: Lengths: 1, 0
Component 5: target is logical, current is NULL
Component 6: target is NULL, current is call
Component 7: Modes of target, current: call, name
Component 7: target, current do not match when deparsed
Component 8: Modes of target, current: name, logical
...
── Failure ('test-api_compatibility.R:688:2'): colWeightedMads works  ──────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:708:2'): colWeightedMeans works  ─────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:728:2'): colWeightedMedians works  ───────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:748:2'): colWeightedSds works  ───────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:768:2'): colWeightedVars works  ──────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:788:2'): rowAlls works  ──────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:812:2'): rowAnyNAs works  ────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:832:2'): rowAnys works  ──────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:881:2'): rowCollapse works  ──────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:905:2'): rowCounts works  ────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:929:2'): rowCummaxs works  ───────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:949:2'): rowCummins works  ───────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:969:2'): rowCumprods works  ──────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:989:2'): rowCumsums works  ───────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1009:2'): rowDiffs works  ────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1029:2'): rowIQRDiffs works  ─────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1053:2'): rowIQRs works  ─────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1073:2'): rowLogSumExps works  ───────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1093:2'): rowMadDiffs works  ─────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1117:2'): rowMads works  ─────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1137:2'): rowMaxs works  ─────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1157:2'): rowMeans2 works  ───────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Names: 3 string mismatches
Length mismatch: comparison on first 7 components
Component 5: Modes: logical, call
Component 5: Lengths: 1, 2
Component 5: target is logical, current is call
Component 6: Modes of target, current: call, name
Component 6: target, current do not match when deparsed
Component 7: Modes of target, current: name, logical
Component 7: target, current do not match when deparsed
── Failure ('test-api_compatibility.R:1177:2'): rowMedians works  ──────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1197:2'): rowMins works  ─────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1217:2'): rowOrderStats works  ───────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1242:2'): rowProds works  ────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1262:2'): rowQuantiles works  ────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Names: 3 string mismatches
Length mismatch: comparison on first 9 components
Component 7: Modes: numeric, name
Component 7: target is numeric, current is name
Component 8: Modes of target, current: name, logical
Component 8: target, current do not match when deparsed
── Failure ('test-api_compatibility.R:1282:2'): rowRanges works  ───────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1302:2'): rowRanks works  ────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1326:2'): rowSdDiffs works  ──────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1350:2'): rowSds works  ──────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Names: 4 string mismatches
Length mismatch: comparison on first 8 components
Component 5: Modes: logical, NULL
Component 5: Lengths: 1, 0
Component 5: target is logical, current is NULL
Component 6: target is NULL, current is call
Component 7: Modes of target, current: call, name
Component 7: target, current do not match when deparsed
Component 8: Modes of target, current: name, logical
...
── Failure ('test-api_compatibility.R:1370:2'): rowSums2 works  ────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1390:2'): rowTabulates works  ────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1411:2'): rowVarDiffs works  ─────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1435:2'): rowVars works  ─────────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Names: 4 string mismatches
Length mismatch: comparison on first 8 components
Component 5: Modes: logical, NULL
Component 5: Lengths: 1, 0
Component 5: target is logical, current is NULL
Component 6: target is NULL, current is call
Component 7: Modes of target, current: call, name
Component 7: target, current do not match when deparsed
Component 8: Modes of target, current: name, logical
...
── Failure ('test-api_compatibility.R:1455:2'): rowWeightedMads works  ─────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1476:2'): rowWeightedMeans works  ────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1497:2'): rowWeightedMedians works  ──────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1518:2'): rowWeightedSds works  ──────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target
── Failure ('test-api_compatibility.R:1539:2'): rowWeightedVars works  ─────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Component "useNames": 'is.NA' value mismatch: 1 in current 0 in target

[ FAIL 70 | WARN 261 | SKIP 0 | PASS 242 ]
Error: Test failures
Execution halted

Example timings

MatrixGenerics.Rcheck/MatrixGenerics-Ex.timings

nameusersystemelapsed
rowAlls0.0030.0000.003
rowAnyNAs0.0010.0000.002
rowAnys0.0020.0000.001
rowAvgsPerColSet0.0030.0000.003
rowCollapse0.0010.0000.002
rowCounts0.0020.0000.002
rowCummaxs0.0020.0000.002
rowCummins0.0010.0000.002
rowCumprods0.0010.0000.002
rowCumsums0.0010.0000.001
rowDiffs0.0020.0000.001
rowIQRDiffs0.0040.0000.004
rowIQRs0.0030.0000.004
rowLogSumExps0.0020.0000.001
rowMadDiffs0.0030.0000.003
rowMads0.0010.0000.001
rowMaxs0.0010.0000.001
rowMeans0.0010.0000.001
rowMeans20.0020.0000.002
rowMedians0.0020.0000.002
rowMins0.0000.0010.002
rowOrderStats0.0000.0010.002
rowProds0.0010.0000.002
rowQuantiles0.0040.0000.003
rowRanges0.0020.0000.002
rowRanks0.0010.0000.002
rowSdDiffs0.0020.0000.002
rowSds0.0020.0000.001
rowSums0.0000.0020.001
rowSums20.0000.0020.002
rowTabulates0.0040.0000.003
rowVarDiffs0.0060.0000.006
rowVars0.0010.0000.001
rowWeightedMads0.0020.0000.002
rowWeightedMeans0.0020.0000.002
rowWeightedMedians0.0020.0000.002
rowWeightedSds0.0020.0000.002
rowWeightedVars0.0020.0000.002