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This page was generated on 2023-06-06 11:00:36 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for MMAPPR2 on kunpeng2


To the developers/maintainers of the MMAPPR2 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MMAPPR2.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1244/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MMAPPR2 1.15.0  (landing page)
Jonathon Hill
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/MMAPPR2
git_branch: devel
git_last_commit: e24764b
git_last_commit_date: 2023-04-25 15:10:54 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: MMAPPR2
Version: 1.15.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data MMAPPR2
StartedAt: 2023-06-05 13:06:15 -0000 (Mon, 05 Jun 2023)
EndedAt: 2023-06-05 13:07:41 -0000 (Mon, 05 Jun 2023)
EllapsedTime: 85.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data MMAPPR2
###
##############################################################################
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* checking for file ‘MMAPPR2/DESCRIPTION’ ... OK
* preparing ‘MMAPPR2’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MMAPPR2.Rmd’ using rmarkdown
running: bash  -c "# Cooking show code to account for cases when samtools is not installed
echo '#!/bin/bash' > /tmp/samtools
chmod 755 /tmp/samtools"

Quitting from lines 95-118 [param] (MMAPPR2.Rmd)
Error: processing vignette 'MMAPPR2.Rmd' failed with diagnostics:
invalid class "VEPFlags" object: Ensembl >=88 requires vep script  (not variant_effect_predictor.pl)
--- failed re-building ‘MMAPPR2.Rmd’

SUMMARY: processing the following file failed:
  ‘MMAPPR2.Rmd’

Error: Vignette re-building failed.
Execution halted