| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:34 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the LowMACA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LowMACA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1069/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| LowMACA 1.31.0 (landing page) Giorgio Melloni
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: LowMACA |
| Version: 1.31.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL LowMACA |
| StartedAt: 2023-06-05 08:35:02 -0000 (Mon, 05 Jun 2023) |
| EndedAt: 2023-06-05 08:36:15 -0000 (Mon, 05 Jun 2023) |
| EllapsedTime: 73.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL LowMACA
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* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘LowMACA’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Checking if clustalo is in the PATH...
Warning in .ClustalChecks(ClustalCommand = "clustalo") :
Clustal Omega is not in the PATH:
You can either change clustalo command using lmParams function or use the web service. See ?setup
Checking perl installation...
Checking perl modules XML::Simple and LWP...
Can't locate XML/Simple.pm in @INC (you may need to install the XML::Simple module) (@INC contains: /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5).
BEGIN failed--compilation aborted.
Warning in system(paste(perl, "-MXML::Simple -e 1"), intern = TRUE) :
running command '/usr/bin/perl -MXML::Simple -e 1' had status 2
Warning in .PerlModuleChecks(stop = FALSE, perl = "perl") :
XML::Simple module for perl is not installed.
If you don't want to install a local clustal omega and use the web service, XML::Simple is required
Can't locate LWP.pm in @INC (you may need to install the LWP module) (@INC contains: /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5).
BEGIN failed--compilation aborted.
Warning in system(paste(perl, "-MLWP -e 1"), intern = TRUE) :
running command '/usr/bin/perl -MLWP -e 1' had status 2
Warning in .PerlModuleChecks(stop = FALSE, perl = "perl") :
LWP module for perl is not installed.
If you don't want to install a local clustal omega and use the web service, LWP is required
** testing if installed package can be loaded from final location
Checking if clustalo is in the PATH...
Warning in .ClustalChecks(ClustalCommand = "clustalo") :
Clustal Omega is not in the PATH:
You can either change clustalo command using lmParams function or use the web service. See ?setup
Checking perl installation...
Checking perl modules XML::Simple and LWP...
Can't locate XML/Simple.pm in @INC (you may need to install the XML::Simple module) (@INC contains: /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5).
BEGIN failed--compilation aborted.
Warning in system(paste(perl, "-MXML::Simple -e 1"), intern = TRUE) :
running command '/usr/bin/perl -MXML::Simple -e 1' had status 2
Warning in .PerlModuleChecks(stop = FALSE, perl = "perl") :
XML::Simple module for perl is not installed.
If you don't want to install a local clustal omega and use the web service, XML::Simple is required
Can't locate LWP.pm in @INC (you may need to install the LWP module) (@INC contains: /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5).
BEGIN failed--compilation aborted.
Warning in system(paste(perl, "-MLWP -e 1"), intern = TRUE) :
running command '/usr/bin/perl -MLWP -e 1' had status 2
Warning in .PerlModuleChecks(stop = FALSE, perl = "perl") :
LWP module for perl is not installed.
If you don't want to install a local clustal omega and use the web service, LWP is required
** testing if installed package keeps a record of temporary installation path
* DONE (LowMACA)