| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:33 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the Heatplus package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Heatplus.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 904/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Heatplus 3.9.0 (landing page) Alexander Ploner
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | |||||||||
| Package: Heatplus |
| Version: 3.9.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:Heatplus.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings Heatplus_3.9.0.tar.gz |
| StartedAt: 2023-06-05 23:57:43 -0000 (Mon, 05 Jun 2023) |
| EndedAt: 2023-06-05 23:58:31 -0000 (Mon, 05 Jun 2023) |
| EllapsedTime: 48.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Heatplus.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:Heatplus.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings Heatplus_3.9.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/Heatplus.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘Heatplus/DESCRIPTION’ ... OK
* this is package ‘Heatplus’ version ‘3.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Heatplus’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘stats:::plotNode’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
annHeatmap2: no visible global function definition for ‘clustfun’
annHeatmap2: no visible global function definition for ‘distfun’
annHeatmap2: no visible binding for global variable ‘cuth’
annHeatmap2: no visible binding for global variable ‘asIs’
annHeatmap2: no visible binding for global variable ‘inclRef’
Undefined global functions or variables:
asIs clustfun cuth distfun inclRef
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘annHeatmap.Rnw’... OK
‘annHeatmapCommentedSource.Rnw’... OK
‘oldHeatplus.Rnw’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.18-bioc/meat/Heatplus.Rcheck/00check.log’
for details.
Heatplus.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL Heatplus ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘Heatplus’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Heatplus)
Heatplus.Rcheck/Heatplus-Ex.timings
| name | user | system | elapsed | |
| BrewerClusterCol | 0.037 | 0.000 | 0.036 | |
| RGBColVec | 0 | 0 | 0 | |
| annHeatmap | 0.902 | 0.032 | 0.936 | |
| annHeatmap2 | 0.162 | 0.004 | 0.166 | |
| breakColors | 0.006 | 0.000 | 0.006 | |
| convAnnData | 0.037 | 0.004 | 0.041 | |
| doLegend | 0.002 | 0.000 | 0.001 | |
| g2r.colors | 0.004 | 0.000 | 0.003 | |
| heatmapLayout | 0.002 | 0.000 | 0.002 | |
| heatmap_2 | 0.000 | 0.000 | 0.001 | |
| heatmap_plus | 0 | 0 | 0 | |
| modifyExistingList | 0.001 | 0.000 | 0.001 | |
| niceBreaks | 0.000 | 0.000 | 0.001 | |
| oldCutplot.dendrogram | 0.000 | 0.000 | 0.001 | |
| oldPicketplot | 0 | 0 | 0 | |
| picketPlot | 0.11 | 0.00 | 0.11 | |
| plot.annHeatmap | 0.174 | 0.008 | 0.183 | |
| print.annHeatmap | 0.015 | 0.000 | 0.015 | |
| regHeatmap | 0.031 | 0.000 | 0.031 | |