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This page was generated on 2023-06-06 11:00:31 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
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BUILD results for FLAMES on kunpeng2


To the developers/maintainers of the FLAMES package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FLAMES.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 696/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FLAMES 1.7.0  (landing page)
Oliver Voogd
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/FLAMES
git_branch: devel
git_last_commit: 0830160
git_last_commit_date: 2023-04-25 15:31:20 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: FLAMES
Version: 1.7.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data FLAMES
StartedAt: 2023-06-05 11:29:52 -0000 (Mon, 05 Jun 2023)
EndedAt: 2023-06-05 11:33:15 -0000 (Mon, 05 Jun 2023)
EllapsedTime: 203.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data FLAMES
###
##############################################################################
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* checking for file ‘FLAMES/DESCRIPTION’ ... OK
* preparing ‘FLAMES’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘FLAMES_vignette.Rmd’ using rmarkdown
ERROR: Unable to locate a modulefile for 'minimap2'
which: no minimap2 in (/home/biocbuild/R/R-4.3.0/bin:/home/biocbuild/.local/bin:/home/biocbuild/bin:/home/biocbuild/.local/bin:/home/biocbuild/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/home/biocbuild/libudunits-2/bin:/home/biocbuild/.dotnet:/home/biocbuild/openbabel-3.1.1/bin)
ERROR: Unable to locate a modulefile for 'minimap2'
which: no minimap2 in (/home/biocbuild/R/R-4.3.0/bin:/home/biocbuild/.local/bin:/home/biocbuild/bin:/home/biocbuild/.local/bin:/home/biocbuild/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/home/biocbuild/libudunits-2/bin:/home/biocbuild/.dotnet:/home/biocbuild/openbabel-3.1.1/bin)

Quitting from lines 85-93 [unnamed-chunk-2] (FLAMES_vignette.Rmd)
Error: processing vignette 'FLAMES_vignette.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘FLAMES_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘FLAMES_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted