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This page was generated on 2023-06-06 11:00:28 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the CNORode package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNORode.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 375/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CNORode 1.43.0 (landing page) Attila Gabor
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | |||||||||
| Package: CNORode |
| Version: 1.43.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL CNORode |
| StartedAt: 2023-06-05 08:34:39 -0000 (Mon, 05 Jun 2023) |
| EndedAt: 2023-06-05 08:35:00 -0000 (Mon, 05 Jun 2023) |
| EllapsedTime: 21.0 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL CNORode ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘CNORode’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 10.3.1’ gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c FG_transfer_function.c -o FG_transfer_function.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodea.c -o cvodea.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodea_io.c -o cvodea_io.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodes.c -o cvodes.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodes_band.c -o cvodes_band.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodes_bandpre.c -o cvodes_bandpre.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodes_bbdpre.c -o cvodes_bbdpre.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodes_dense.c -o cvodes_dense.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodes_diag.c -o cvodes_diag.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodes_direct.c -o cvodes_direct.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodes_io.c -o cvodes_io.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodes_spbcgs.c -o cvodes_spbcgs.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodes_spgmr.c -o cvodes_spgmr.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodes_spils.c -o cvodes_spils.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c cvodes_sptfqmr.c -o cvodes_sptfqmr.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c decimal2binary.c -o decimal2binary.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c findStates.c -o findStates.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c fnvector_serial.c -o fnvector_serial.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c getAdjacencyMatrix.c -o getAdjacencyMatrix.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c getNumBits.c -o getNumBits.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c getNumInputs.c -o getNumInputs.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c getStateIndex.c -o getStateIndex.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c getTruthTables.c -o getTruthTables.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c get_count_bits.c -o get_count_bits.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c get_input_index.c -o get_input_index.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c get_support_truth_tables.c -o get_support_truth_tables.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c get_truth_tables_index.c -o get_truth_tables_index.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c hill_function.c -o hill_function.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c linear_transfer_function.c -o linear_transfer_function.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c normHill.c -o normHill.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c normHill_mod.c -o normHill_mod.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c nvector_serial.c -o nvector_serial.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c printAdjMat.c -o printAdjMat.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c printInterMat.c -o printInterMat.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c printNminiTerms.c -o printNminiTerms.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c printTruthTables.c -o printTruthTables.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c rhsODE.c -o rhsODE.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c sim_logic_ode.c -o sim_logic_ode.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c simulateODE.c -o simulateODE.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c sundials_band.c -o sundials_band.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c sundials_dense.c -o sundials_dense.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c sundials_direct.c -o sundials_direct.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c sundials_iterative.c -o sundials_iterative.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c sundials_math.c -o sundials_math.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c sundials_nvector.c -o sundials_nvector.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c sundials_spbcgs.c -o sundials_spbcgs.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c sundials_spgmr.c -o sundials_spgmr.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -g -O2 -c sundials_sptfqmr.c -o sundials_sptfqmr.o gcc -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o CNORode.so FG_transfer_function.o cvodea.o cvodea_io.o cvodes.o cvodes_band.o cvodes_bandpre.o cvodes_bbdpre.o cvodes_dense.o cvodes_diag.o cvodes_direct.o cvodes_io.o cvodes_spbcgs.o cvodes_spgmr.o cvodes_spils.o cvodes_sptfqmr.o decimal2binary.o findStates.o fnvector_serial.o getAdjacencyMatrix.o getNumBits.o getNumInputs.o getStateIndex.o getTruthTables.o get_count_bits.o get_input_index.o get_support_truth_tables.o get_truth_tables_index.o hill_function.o linear_transfer_function.o normHill.o normHill_mod.o nvector_serial.o printAdjMat.o printInterMat.o printNminiTerms.o printTruthTables.o rhsODE.o sim_logic_ode.o simulateODE.o sundials_band.o sundials_dense.o sundials_direct.o sundials_iterative.o sundials_math.o sundials_nvector.o sundials_spbcgs.o sundials_spgmr.o sundials_sptfqmr.o -L/home/biocbuild/R/R-4.3.0/lib -lR installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-CNORode/00new/CNORode/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CNORode)