Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:26 -0000 (Tue, 06 Jun 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the BiocHubsShiny package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocHubsShiny.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 175/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
BiocHubsShiny 1.1.0 (landing page) Marcel Ramos
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | |||||||||
Package: BiocHubsShiny |
Version: 1.1.0 |
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:BiocHubsShiny.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings BiocHubsShiny_1.1.0.tar.gz |
StartedAt: 2023-06-05 18:07:48 -0000 (Mon, 05 Jun 2023) |
EndedAt: 2023-06-05 18:10:40 -0000 (Mon, 05 Jun 2023) |
EllapsedTime: 171.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: BiocHubsShiny.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:BiocHubsShiny.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings BiocHubsShiny_1.1.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/BiocHubsShiny.Rcheck’ * using R version 4.3.0 (2023-04-21) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (GCC) 10.3.1 GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * checking for file ‘BiocHubsShiny/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘BiocHubsShiny’ version ‘1.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BiocHubsShiny’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘BiocHubsShiny.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
BiocHubsShiny.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL BiocHubsShiny ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘BiocHubsShiny’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocHubsShiny)
BiocHubsShiny.Rcheck/tests/testthat.Rout
R version 4.3.0 (2023-04-21) -- "Already Tomorrow" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > shinytest2::test_app() Loading required package: testthat Loading required package: shiny ✔ | F W S OK | Context ⠏ | 0 | server ⠋ | 1 | server ⠙ | 2 | server ✔ | 2 | server [24.3s] ⠏ | 0 | shinytest2 Error in initialize(...) : Invalid path to Chrome ⠋ | 1 0 | shinytest2 Error in initialize(...) : Invalid path to Chrome Error in initialize(...) : Invalid path to Chrome ⠹ | 3 0 | shinytest2 ✔ | 3 0 | shinytest2 [0.2s] ──────────────────────────────────────────────────────────────────────────────── Skip ('test-shinytest2.R:6:5'): {shinytest2} recording: BiocHubsShiny-EH Reason: `shinytest2::AppDriver` can not be initialized as {chromote} can not be started Skip ('test-shinytest2.R:19:5'): {shinytest2} recording: BiocHubsShiny-about Reason: `shinytest2::AppDriver` can not be initialized as {chromote} can not be started Skip ('test-shinytest2.R:31:5'): {shinytest2} recording: BiocHubsShiny-selection Reason: `shinytest2::AppDriver` can not be initialized as {chromote} can not be started ──────────────────────────────────────────────────────────────────────────────── ══ Results ═════════════════════════════════════════════════════════════════════ Duration: 24.6 s ── Skipped tests ────────────────────────────────────────────────────────────── • `shinytest2::AppDriver` can not be initialized as {chromote} can not be started (3) [ FAIL 0 | WARN 0 | SKIP 3 | PASS 2 ] Deleting unused snapshots: • linux-4.3/shinytest2/BiocHubsShiny-EH-001.png • linux-4.3/shinytest2/BiocHubsShiny-about-001.png • linux-4.3/shinytest2/BiocHubsShiny-selection-001.png > > proc.time() user system elapsed 18.398 0.999 26.711
BiocHubsShiny.Rcheck/BiocHubsShiny-Ex.timings
name | user | system | elapsed | |
BiocHubsShiny | 0 | 0 | 0 | |