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This page was generated on 2023-06-06 11:00:27 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
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BUILD results for BioNet on kunpeng2


To the developers/maintainers of the BioNet package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioNet.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 208/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioNet 1.61.0  (landing page)
Marcus Dittrich
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/BioNet
git_branch: devel
git_last_commit: c4acbe6
git_last_commit_date: 2023-04-25 14:17:41 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: BioNet
Version: 1.61.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data BioNet
StartedAt: 2023-06-05 09:51:30 -0000 (Mon, 05 Jun 2023)
EndedAt: 2023-06-05 09:51:55 -0000 (Mon, 05 Jun 2023)
EllapsedTime: 25.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data BioNet
###
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* checking for file ‘BioNet/DESCRIPTION’ ... OK
* preparing ‘BioNet’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Tutorial.Rnw’ using Sweave
Loading required package: graph
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, aperm, append, as.data.frame,
    basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match,
    mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff,
    sort, table, tapply, union, unique, unsplit,
    which.max, which.min

Loading required package: RBGL

Error: processing vignette 'Tutorial.Rnw' failed with diagnostics:
 chunk 2 
Error in library(DLBCL) : there is no package called ‘DLBCL’

--- failed re-building ‘Tutorial.Rnw’

SUMMARY: processing the following file failed:
  ‘Tutorial.Rnw’

Error: Vignette re-building failed.
Execution halted