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This page was generated on 2023-06-06 11:00:26 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the BHC package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BHC.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 156/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BHC 1.53.0 (landing page) Rich Savage
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | |||||||||
| Package: BHC |
| Version: 1.53.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL BHC |
| StartedAt: 2023-06-05 08:20:39 -0000 (Mon, 05 Jun 2023) |
| EndedAt: 2023-06-05 08:21:19 -0000 (Mon, 05 Jun 2023) |
| EllapsedTime: 39.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL BHC
###
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* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘BHC’ ...
** using staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for gcc option to support OpenMP... -fopenmp
checking whether OpenMP will work in this package... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c BlockCovarianceMatrix.cpp -o BlockCovarianceMatrix.o
In file included from BlockCovarianceMatrix.h:16,
from BlockCovarianceMatrix.cpp:15:
header.h:16: warning: "NDEBUG" redefined
16 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c CubicSplineTimecourseDataSet.cpp -o CubicSplineTimecourseDataSet.o
In file included from DataSet.h:16,
from TimecourseDataSet.h:20,
from CubicSplineTimecourseDataSet.h:20,
from CubicSplineTimecourseDataSet.cpp:15:
header.h:16: warning: "NDEBUG" redefined
16 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c DataSet.cpp -o DataSet.o
In file included from DataSet.h:16,
from DataSet.cpp:13:
header.h:16: warning: "NDEBUG" redefined
16 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c DirichletProcessMixture.cpp -o DirichletProcessMixture.o
In file included from DirichletProcessMixture.h:4,
from DirichletProcessMixture.cpp:15:
header.h:16: warning: "NDEBUG" redefined
16 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c MultinomialDataSet.cpp -o MultinomialDataSet.o
In file included from DataSet.h:16,
from MultinomialDataSet.h:4,
from MultinomialDataSet.cpp:1:
header.h:16: warning: "NDEBUG" redefined
16 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c Node.cpp -o Node.o
In file included from Node.h:16,
from Node.cpp:13:
header.h:16: warning: "NDEBUG" redefined
16 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c RobustCubicSplineTimecourseDataSet.cpp -o RobustCubicSplineTimecourseDataSet.o
In file included from DataSet.h:16,
from TimecourseDataSet.h:20,
from CubicSplineTimecourseDataSet.h:20,
from RobustCubicSplineTimecourseDataSet.h:20,
from RobustCubicSplineTimecourseDataSet.cpp:15:
header.h:16: warning: "NDEBUG" redefined
16 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c RobustSquaredExponentialTimecourseDataSet.cpp -o RobustSquaredExponentialTimecourseDataSet.o
In file included from SquaredExponentialTimecourseDataSet.h:20,
from RobustSquaredExponentialTimecourseDataSet.h:20,
from RobustSquaredExponentialTimecourseDataSet.cpp:15:
header.h:16: warning: "NDEBUG" redefined
16 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c SquaredExponentialTimecourseDataSet.cpp -o SquaredExponentialTimecourseDataSet.o
In file included from SquaredExponentialTimecourseDataSet.h:20,
from SquaredExponentialTimecourseDataSet.cpp:15:
header.h:16: warning: "NDEBUG" redefined
16 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c TimecourseDataSet.cpp -o TimecourseDataSet.o
In file included from DataSet.h:16,
from TimecourseDataSet.h:20,
from TimecourseDataSet.cpp:13:
header.h:16: warning: "NDEBUG" redefined
16 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c bhc.cpp -o bhc.o
In file included from bhc.cpp:17:
header.h:16: warning: "NDEBUG" redefined
16 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c gammaln.cpp -o gammaln.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c header.cpp -o header.o
In file included from header.cpp:1:
header.h:16: warning: "NDEBUG" redefined
16 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c multinomial_CalculateHyperparameters.cpp -o multinomial_CalculateHyperparameters.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c multinomial_OutputDendrogramInformation.cpp -o multinomial_OutputDendrogramInformation.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c multinomial_ReadInData.cpp -o multinomial_ReadInData.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c multinomial_bayeslink_binf.cpp -o multinomial_bayeslink_binf.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -fopenmp -I/usr/local/include -fPIC -g -O2 -c multinomial_binevidence.cpp -o multinomial_binevidence.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o BHC.so BlockCovarianceMatrix.o CubicSplineTimecourseDataSet.o DataSet.o DirichletProcessMixture.o MultinomialDataSet.o Node.o RobustCubicSplineTimecourseDataSet.o RobustSquaredExponentialTimecourseDataSet.o SquaredExponentialTimecourseDataSet.o TimecourseDataSet.o bhc.o gammaln.o header.o multinomial_CalculateHyperparameters.o multinomial_OutputDendrogramInformation.o multinomial_ReadInData.o multinomial_bayeslink_binf.o multinomial_binevidence.o -fopenmp -L/home/biocbuild/R/R-4.3.0/lib -lR
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-BHC/00new/BHC/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BHC)